Fishery characteristics, genetic structure, population demography and value chain of Skipjack and Kawakawa exploited in coastal waters of the Western Indian Ocean

Abstract

Tuna represents a highly valuable global fishery, comprising 7.9% of the total 67.9 million metric tons (MT) of marine finfish catch. Among tuna species, Katsuwonus pelamis, skipjack and Euthynnus affinis, kawakawa are commercially important, particularly for artisanal fisheries. Skipjack is the most dominant tuna species globally, contributing over 60% to total tuna production. In the Indian Ocean (IO), skipjack catches approximately 420,000 MT annually. Kawakawa, the second most abundant neritic tuna in the IO, accounting for roughly 12% of neritic tuna landings, is primarily harvested by artisanal fleets, with annual catches of around 160,000 MT. While current assessments indicate that skipjack and kawakawa stocks in the IO are not overfished, maintaining their long-term health is crucial. This research addresses three key areas: genetic diversity, population structure, and connectivity of skipjack and kawakawa tuna in the Western Indian Ocean (WIO); size structure and reproductive characteristics of these species within the WIO; and the value chain of the Kenyan artisanal tuna fishery, focusing on skipjack and kawakawa. To achieve these objectives, skipjack and kawakawa samples were collected from Kenya, Tanzania, Mozambique, and South Africa. A non-random sampling approach was employed to obtain specimens and data from artisanal and recreational fisheries. Biological and genetic sampling were conducted concurrently. The economic value chain of the Kenyan artisanal tuna fishery was examined through questionnaires and catch data. This analysis focused on the socio-demographic profiles of key actors, the value chain structure, and associated economic benefits across four Kenyan landing sites. To investigate stock structure in WIO skipjack and kawakawa tuna, we employed tunable Genotyping-by-Sequencing (tGBS) to generate genome-wide Single Nucleotide Polymorphism (SNP) data. Skipjack analysis revealed 7005 SNPs with an average observed heterozygosity (Ho) of 0.206. While overall genetic differentiation (FST) among samples was low (global FST = 0.003) between samples (FST = 0 "“ 0.013), significant genetic differences were observed between skipjack samples taken north of Mtwara in southern Tanzania (i.e., northern Tanzania, Kenya and Sri Lanka) and those to the south (i.e., southern Tanzania, Mozambique and South Africa), with Seychelles falling closer to the southern grouping. Kawakawa analysis, based on 14806 SNPs and an average Ho of 0.2585, indicated a patchy distribution of low but significant genetic differentiation among WIO populations (global FST = 0.018) between-sample (FST = 0.003 "“ 0.036) but with no obvious geographically-based pattern. However, unlike skipjack, a clear geographic pattern in genetic structure was not evident for kawakawa. Skipjack and kawakawa populations in the WIO exhibited seasonal fluctuations in size distribution, potentially influenced by environmental conditions and fishing practices. Landings of both species were male-biased, with sex ratios of 58% and 53% for skipjack and kawakawa, respectively. Female skipjack reached sexual maturity at a fork length (FL) of 42.0 cm, while males matured at 47.0 cm FL. For kawakawa, female and male maturation lengths were 44.0 cm FL and 45.3 cm FL, respectively. Spawning occurred throughout the year, with peak activity coinciding with the Northeast Monsoon (NEM) season. Our analysis of the artisanal tuna value chain indicates that fishers primarily sell their catch to agents (53%), with the remaining proportions going to traders (20%) and processors (18%). Processors, predominantly women, play a key role in the value chain and realized the highest net profit margin (49.5%). Limited post-harvest infrastructure, inadequate transportation, and poor marketing conditions were identified as key challenges impacting the quality of fish lowering their income. These challenges disproportionately affect fishers with limited access to market information and financial resources. The findings demonstrate the need for multi-level interventions to optimize benefits from the artisanal tuna fishery along the entire value chain taking into consideration the economic, environmental, and social dimensions. This research provides crucial information for effective tuna management in the IO. Current management practices treat skipjack and kawakawa as a single, homogenous population across the entire IO. However, our genetic findings suggest the presence of distinct population groups (stocks) for both species within the WIO. Moreover, seasonal variations in size structure and reproductive characteristics observed support this hypothesis of multiple stocks. These results emphasize the need for a precautionary approach to tuna management in the region. Collaborative efforts among countries are essential to develop sustainable fisheries management strategies that consider biological, economic, and social factors. By integrating these perspectives, we can ensure the long-term health of tuna populations while supporting the livelihoods of fishing communities.